STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCERG1LTranscription elongation regulator 1-like protein. (518 aa)    
Predicted Functional Partners:
MFAP1
Microfibrillar-associated protein 1.
   
 0.905
PRPF38A
pre-mRNA-splicing factor 38A.
   
 0.901
ZMAT2
Zinc finger matrin-type protein 2.
    
  0.876
DDX46
Probable ATP-dependent RNA helicase DDX46.
   
 0.867
RBM22
pre-mRNA-splicing factor RBM22 isoform X1.
   
 0.811
SNW1
SNW domain-containing protein 1 isoform X1.
   
 0.805
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 
 0.804
CDC5L
Cell division cycle 5-like protein.
   
  0.799
SRRM1
Serine/arginine repetitive matrix protein 1 isoform X1.
   
 0.795
SF3B4
LOW QUALITY PROTEIN: splicing factor 3B subunit 4.
    
 
 0.788
Your Current Organism:
Balaenoptera acutorostrata
NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.