STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZC3H4LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 4. (1190 aa)    
Predicted Functional Partners:
SYMPK
Symplekin.
   
 0.771
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.764
CPSF3
Cleavage and polyadenylation specificity factor subunit 3 isoform X1.
   
 0.761
CPSF1
Cleavage and polyadenylation specificity factor subunit 1.
   
 0.758
CSTF3
Cleavage stimulation factor subunit 3.
   
 0.756
NUDT21
Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]
    
 0.754
FIP1L1
pre-mRNA 3'-end-processing factor FIP1 isoform X1.
    
 0.753
CSTF1
Cleavage stimulation factor subunit 1.
   
 0.750
SSU72
RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1.
   
 0.727
FNDC10
LOW QUALITY PROTEIN: fibronectin type III domain-containing protein 10.
   
 0.718
Your Current Organism:
Balaenoptera acutorostrata
NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.