STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBBP6LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RBBP6. (1796 aa)    
Predicted Functional Partners:
WDR33
pre-mRNA 3' end processing protein WDR33 isoform X1.
   
 
 0.970
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.961
CPSF1
Cleavage and polyadenylation specificity factor subunit 1.
    
 
 0.960
CPSF3
Cleavage and polyadenylation specificity factor subunit 3 isoform X1.
    
 
 0.960
UBE3D
E3 ubiquitin-protein ligase E3D.
    
 0.956
SYMPK
Symplekin.
    
 
 0.951
FIP1L1
pre-mRNA 3'-end-processing factor FIP1 isoform X1.
    
 
 0.939
WDR82
WD repeat-containing protein 82.
    
 
 0.937
PCF11
pre-mRNA cleavage complex 2 protein Pcf11.
   
 
 0.937
WDR77
Methylosome protein 50 isoform X1.
   
 
 0.835
Your Current Organism:
Balaenoptera acutorostrata
NCBI taxonomy Id: 310752
Other names: B. acutorostrata scammoni, Balaenoptera acutorostrata scammoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.