STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN15140.1Vancomycin resistance protein VanJ. (399 aa)    
Predicted Functional Partners:
SEO25562.1
Vancomycin resistance protein VanJ.
  
  
 
0.891
SEN15159.1
Two-component system, OmpR family, response regulator VanR.
       0.806
SEN15181.1
Two-component system, OmpR family, sensor histidine kinase VanS.
       0.806
SEO15456.1
Protein of unknown function.
  
     0.594
SEO26442.1
Alpha-1,6-glucosidases, pullulanase-type; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.555
SEN60883.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.463
SEN66247.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.463
SEN70616.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.463
SEO17571.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.463
SEO24814.1
Cysteine desulfurase family protein, VC1184 subfamily.
    
   0.463
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.