STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN29073.1Protein of unknown function. (253 aa)    
Predicted Functional Partners:
SEN29470.1
Hypothetical protein.
  
   0.805
SEN29114.1
Alpha/beta hydrolase.
 
     0.800
SEN51884.1
Spherulation-specific family 4.
  
 
  0.743
SEN68876.1
Hypothetical protein.
  
     0.705
SEN68812.1
Uncharacterized conserved protein, LabA/DUF88 family.
  
     0.691
SEO00564.1
Bifunctional DNA primase/polymerase, N-terminal.
  
     0.677
SEO77738.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family.
  
    0.675
SEO22865.1
Hypothetical protein.
  
     0.667
SEO40717.1
Hypothetical protein.
  
     0.656
SEN29091.1
Predicted DNA-binding protein, MmcQ/YjbR family.
       0.637
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.