STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN86123.1PRC-barrel domain-containing protein. (355 aa)    
Predicted Functional Partners:
SEO99065.1
Osmoprotectant transport system substrate-binding protein.
  
    0.529
SEO06387.1
PRC-barrel domain-containing protein.
  
  
 
0.501
SEN86159.1
IMP dehydrogenase.
       0.479
SEO32973.1
Hypothetical protein.
  
    0.472
SEN86144.1
DNA-binding transcriptional regulator, Lrp family.
  
    0.462
SEN70004.1
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
    0.451
SEN72810.1
PRC-barrel domain-containing protein.
  
  
 
0.445
SEN72752.1
Hypothetical protein.
      
 0.436
SEN86102.1
Predicted amidohydrolase.
       0.435
SEO57781.1
Hypothetical protein.
  
     0.434
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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