Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEN04374.1 | SEN85199.1 | SAMN05216267_100110 | SAMN05216267_101192 | F5/8 type C domain-containing protein. | Phytanoyl-CoA dioxygenase (PhyH). | 0.411 |
SEN61812.1 | SEN85199.1 | SAMN05216267_1007142 | SAMN05216267_101192 | Transcriptional regulator, TetR family. | Phytanoyl-CoA dioxygenase (PhyH). | 0.400 |
SEN85199.1 | SEN04374.1 | SAMN05216267_101192 | SAMN05216267_100110 | Phytanoyl-CoA dioxygenase (PhyH). | F5/8 type C domain-containing protein. | 0.411 |
SEN85199.1 | SEN61812.1 | SAMN05216267_101192 | SAMN05216267_1007142 | Phytanoyl-CoA dioxygenase (PhyH). | Transcriptional regulator, TetR family. | 0.400 |
SEN85199.1 | SEN85220.1 | SAMN05216267_101192 | SAMN05216267_101193 | Phytanoyl-CoA dioxygenase (PhyH). | Regulatory protein, luxR family. | 0.762 |
SEN85199.1 | rho | SAMN05216267_101192 | SAMN05216267_101191 | Phytanoyl-CoA dioxygenase (PhyH). | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.560 |
SEN85220.1 | SEN85199.1 | SAMN05216267_101193 | SAMN05216267_101192 | Regulatory protein, luxR family. | Phytanoyl-CoA dioxygenase (PhyH). | 0.762 |
SEN85220.1 | rho | SAMN05216267_101193 | SAMN05216267_101191 | Regulatory protein, luxR family. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.547 |
rho | SEN85199.1 | SAMN05216267_101191 | SAMN05216267_101192 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Phytanoyl-CoA dioxygenase (PhyH). | 0.560 |
rho | SEN85220.1 | SAMN05216267_101191 | SAMN05216267_101193 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Regulatory protein, luxR family. | 0.547 |