STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN90900.1Predicted phosphoribosyltransferase. (462 aa)    
Predicted Functional Partners:
SEN78044.1
Hypothetical protein.
 
  
 0.981
SEN86194.1
Zn-dependent protease (includes SpoIVFB); Belongs to the peptidase M50B family.
 
    0.618
SEN05953.1
Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.542
SEN05823.1
Tagatose 6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.539
SEO94592.1
Dephospho-CoA kinase.
 
    0.530
SEO66801.1
Zn-dependent protease (includes SpoIVFB); Belongs to the peptidase M50B family.
 
  
 0.500
SEN90853.1
Signal transduction histidine kinase.
  
    0.472
SEN96626.1
Undecaprenyl-diphosphatase.
  
 
 0.461
SEO09307.1
Predicted ester cyclase.
 
 
  0.458
SEO79790.1
Hypothetical protein.
   
    0.457
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.