STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN97967.1Uncharacterized conserved protein, DUF58 family, contains vWF domain. (448 aa)    
Predicted Functional Partners:
SEN98008.1
Protein of unknown function.
 
     0.970
SEN97981.1
MoxR-like ATPase.
 
  
 0.946
SEN97953.1
Hypothetical protein.
       0.883
SEN97993.1
Hypothetical protein.
       0.807
SEO91855.1
Phosphoesterase family protein.
  
     0.607
SEN98021.1
Catechol 2,3-dioxygenase.
       0.531
SEO07150.1
O-Antigen ligase.
  
     0.505
SEO86228.1
Hypothetical protein.
  
     0.502
SEN89498.1
Peptidase A4 family protein.
 
     0.493
egtC
Dimethylhistidine N-methyltransferase; Catalyzes the hydrolysis of the gamma-glutamyl amide bond of hercynyl-gamma-L-glutamyl-L-cysteine sulfoxide to produce hercynylcysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine.
  
   
 0.489
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
Server load: low (18%) [HD]