STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN96819.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
SEN05342.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.769
SEN90324.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.765
SEO05284.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.743
SEO79173.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.698
SEO40784.1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.679
SEO86333.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.645
SEN96831.1
AraC-type DNA-binding protein.
 
    0.592
alc
Allantoicase; Belongs to the allantoicase family.
       0.583
SEP07168.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.578
SEN96421.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.513
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.