STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO26523.1Predicted dehydrogenase. (292 aa)    
Predicted Functional Partners:
SEO26504.1
5-carboxymethyl-2-hydroxymuconate isomerase.
    
  0.878
SEO26492.1
L-glutamine synthetase.
       0.761
SEO07218.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
  0.700
SEO61842.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
  0.671
SEO07256.1
Perosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
  0.652
SEN39322.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein.
 
 
  0.607
SEO15311.1
ATP-grasp ribosomal peptide maturase, SAV_5884 family.
       0.603
SEN19246.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
 
  
 0.595
SEN19325.1
Inosose dehydratase.
  
 
  0.584
SEN19268.1
5-deoxyglucuronate isomerase.
 
  
 0.580
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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