STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO26904.1Phytoene dehydrogenase-related protein. (430 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
 
 0.920
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
 0.870
SEO75712.1
Protoporphyrin IX magnesium-chelatase.
  
 
 0.832
SEO26878.1
Hypothetical protein.
  
    0.789
SEN69696.1
Phytoene desaturase.
  
 
 0.653
SEO15645.1
uroporphyrinogen-III synthase.
  
 
 0.628
SEN58549.1
Predicted amidophosphoribosyltransferases.
  
    0.615
SEN34505.1
Chlorite dismutase.
  
 
 0.611
SEO85263.1
Farnesyl-diphosphate farnesyltransferase.
  
  
 0.563
SEN59454.1
uroporphyrinogen-III synthase.
  
 
 0.549
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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