STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO33171.1Transcriptional regulator, TetR family. (215 aa)    
Predicted Functional Partners:
SEO33153.1
Acyl-CoA dehydrogenase.
       0.794
SEO97542.1
Transcriptional regulator, TetR family.
  
     0.685
SEN70601.1
Transcriptional regulator, AsnC family.
  
   
 0.555
SEN97253.1
Polyketide cyclase / dehydrase and lipid transport.
      
 0.478
SEO00827.1
RNA-binding protein (KH domain); Belongs to the UPF0109 family.
      
 0.478
SEO22924.1
DNA-binding transcriptional regulator, MarR family.
  
   
 0.442
SEN44554.1
Hypothetical protein.
  
     0.436
SEO77738.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family.
  
     0.427
SEO14635.1
Transcriptional regulator, AsnC family.
      
 0.416
SEO32419.1
Signal transduction histidine kinase.
      
 0.406
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.