STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO38841.1Protein of unknown function. (408 aa)    
Predicted Functional Partners:
SEN39272.1
Signal transduction histidine kinase.
  
 0.935
SEN54455.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
    
 
 0.894
SEN61498.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
    
 
 0.894
SEO10860.1
Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.886
SEO38813.1
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B).
  
   0.780
SEN36534.1
Protein of unknown function.
  
     0.753
SEO26792.1
Protein of unknown function.
  
     0.753
rbpA-2
RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.752
SEO15932.1
Acetoin utilization protein AcuC.
    
 0.744
SEN59946.1
Superfamily II DNA or RNA helicase.
 
  
 0.736
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.