STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO44144.1Predicted metal-dependent peptidase. (491 aa)    
Predicted Functional Partners:
SEO44162.1
AAA domain (dynein-related subfamily).
 
    0.972
SEO44184.1
Hypothetical protein.
 
     0.943
SEO59195.1
Hypothetical protein.
  
     0.729
SEO59209.1
Zn-dependent protease with chaperone function.
  
    0.654
SEN16481.1
HEXXH motif-containing protein.
  
     0.630
SEN17552.1
RHS repeat-associated core domain-containing protein.
  
     0.514
SEO35976.1
Pectate lyase superfamily protein.
  
     0.503
SEN11220.1
RHS repeat-associated core domain-containing protein.
  
     0.498
SEO44108.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.476
SEO44124.1
Hypothetical protein.
       0.476
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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