STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO59754.1Hypothetical protein. (139 aa)    
Predicted Functional Partners:
SEO39369.1
Hypothetical protein.
  
     0.700
SEN43159.1
Hypothetical protein.
  
     0.677
SEO59827.1
Transcriptional regulator, RpiR family.
       0.660
SEO19264.1
Hypothetical protein.
  
     0.655
SEO59842.1
Hypothetical protein.
       0.649
SEN70955.1
Hypothetical protein.
  
     0.638
SEO75446.1
Hypothetical protein.
  
     0.629
SEO85386.1
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.621
SEO99077.1
Histidine ammonia-lyase.
       0.603
SEO60692.1
Hypothetical protein.
  
     0.585
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.