STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO63301.1Transcriptional regulator, TetR family. (190 aa)    
Predicted Functional Partners:
SEO63336.1
Hypothetical protein.
       0.557
SEO44332.1
3',5'-cyclic AMP phosphodiesterase CpdA.
  
     0.496
SEN85220.1
Regulatory protein, luxR family.
  
     0.479
SEN36747.1
Dihydrofolate reductase.
  
     0.456
SEN46801.1
Hypothetical protein.
  
     0.456
SEN46785.1
MarR family protein.
  
     0.454
SEN88767.1
AAA ATPase domain-containing protein.
  
     0.445
SEO21838.1
2'-5' RNA ligase.
  
     0.438
SEN97905.1
Hypothetical protein.
  
     0.432
SEN54625.1
ABC-2 type transport system permease protein.
  
     0.419
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.