STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO66372.1Hypothetical protein. (222 aa)    
Predicted Functional Partners:
SEO66401.1
Allophanate hydrolase.
 
  
 0.985
SEO66380.1
Urea carboxylase.
 
   
 0.983
SEO66349.1
Hypothetical protein.
 
    
0.910
SEO66325.1
Transcriptional regulator, TetR family.
 
     0.903
SEN68043.1
Glutamate synthase (NADH) large subunit.
    
  0.870
SEO51545.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
 
  
 0.664
SEO51533.1
Sensor histidine kinase inhibitor, KipI family.
    
 0.652
SEO66304.1
Hypothetical protein.
       0.460
SEO66254.1
Amino acid/polyamine/organocation transporter, APC superfamily.
 
     0.418
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.