STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO71963.1Serine phosphatase. (562 aa)    
Predicted Functional Partners:
SEO71949.1
Methanogenic corrinoid protein MtbC1.
 
     0.946
SEO71915.1
Anti-sigma-factor antagonist.
 
   0.945
SEN81471.1
Methanogenic corrinoid protein MtbC1.
 
     0.770
SEN39272.1
Signal transduction histidine kinase.
  
 
 0.762
SEO71982.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
     0.749
SEO42405.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
   0.727
SEO98036.1
Stage II sporulation protein E (SpoIIE).
  
     0.669
SEO04550.1
PAS fold-containing protein.
 
  0.641
SEO59995.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
   0.626
SEO05769.1
Hypothetical protein.
  
     0.605
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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