STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO76764.1L-galactose dehydrogenase. (315 aa)    
Predicted Functional Partners:
SEO76784.1
L-fuconolactonase.
 
  0.920
SEO76748.1
Hypothetical protein.
       0.782
SEO96122.1
PAS domain S-box-containing protein.
   
  0.713
SEO76792.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
 
    0.655
SEO67030.1
L-fuconolactonase.
 
  0.650
SEN50969.1
Histidinol-phosphate phosphatase.
   
 
  0.625
SEO76813.1
2-deoxy-D-gluconate 3-dehydrogenase.
   
   0.603
SEO76716.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.523
SEO76692.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
       0.508
SEO76736.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.508
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.