STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO76784.1L-fuconolactonase. (312 aa)    
Predicted Functional Partners:
SEO67138.1
L-fuconate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.932
SEO76764.1
L-galactose dehydrogenase.
 
  0.920
SEO67048.1
D-threo-aldose 1-dehydrogenase.
 
  0.882
SEO47290.1
D-threo-aldose 1-dehydrogenase.
 
  0.826
SEO76748.1
Hypothetical protein.
       0.799
SEO76813.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
 
  0.761
SEO76792.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
 
 
  0.747
SEN44597.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
     
 0.704
SEO57881.1
Ferredoxin-NADP reductase.
     
 0.704
SEO67122.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
 
  0.673
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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