STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO76792.12-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase. (350 aa)    
Predicted Functional Partners:
SEO76813.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
 
 0.959
SEP08282.1
L-iditol 2-dehydrogenase/threonine 3-dehydrogenase.
  
  
  0.893
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
     
 0.889
SEO09720.1
DNA-binding transcriptional regulator, FadR family.
     
 0.852
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
 
 
 0.808
SEO06650.1
Fructokinase.
  
 
  0.793
SEO81075.1
Fructokinase.
  
 
  0.793
SEO09739.1
Gluconate kinase, SKI family.
  
  
 0.790
SEO76784.1
L-fuconolactonase.
 
 
  0.747
SEO13884.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.722
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.