STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO79020.1Kelch motif-containing protein. (1332 aa)    
Predicted Functional Partners:
SEO78997.1
Sugar-specific transcriptional regulator TrmB.
 
     0.635
SEN93254.1
NHL repeat-containing protein.
  
  
  0.586
SEO54565.1
Ig-like domain (group 3).
  
     0.545
SEN16639.1
Serine protease.
  
  
  0.517
SEO96917.1
Pro-kumamolisin, activation domain.
  
     0.497
SEO64689.1
Bacteriocin biosynthesis cyclodehydratase domain-containing protein.
  
     0.467
SEO19345.1
Parallel beta-helix repeat (two copies).
  
  
  0.437
SEO77020.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
  
  0.437
SEO91522.1
Alginate lyase.
  
  
  0.432
SEO65332.1
Hypothetical protein.
  
  
  0.430
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.