STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO86847.1Signal transduction histidine kinase. (386 aa)    
Predicted Functional Partners:
SEO86865.1
Two component transcriptional regulator, LuxR family.
  0.957
SEN39272.1
Signal transduction histidine kinase.
  
 0.901
SEO86151.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
  0.828
SEO29154.1
Two component transcriptional regulator, LuxR family.
 
  0.823
SEO77589.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
  0.815
SEO78104.1
Two component transcriptional regulator, LuxR family.
 
  0.813
SEN90833.1
Two component transcriptional regulator, LuxR family.
  
  0.812
SEO02722.1
Two component transcriptional regulator, LuxR family.
 
  0.812
SEN75507.1
Two component transcriptional regulator, LuxR family.
  
  0.811
SEO39713.1
Two component transcriptional regulator, LuxR family.
 
  0.811
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.