STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO91522.1Alginate lyase. (258 aa)    
Predicted Functional Partners:
SEN93543.1
Carbohydrate binding module (family 35).
  
     0.744
SEN19865.1
Alpha-L-arabinofuranosidase B, catalytic.
  
     0.737
SEO66112.1
Endoglucanase.
  
 
  0.726
SEO32660.1
Glycosyl hydrolases family 2.
  
     0.711
SEN93737.1
Hypothetical protein.
  
     0.706
SEN93254.1
NHL repeat-containing protein.
  
     0.694
SEO86228.1
Hypothetical protein.
  
 
   0.638
SEN77619.1
Lysophospholipase L1.
 
 
   0.629
SEO77020.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.607
SEO04788.1
Hypothetical protein.
  
     0.581
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.