STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO95467.1Hypothetical protein. (362 aa)    
Predicted Functional Partners:
SEO92748.1
Tyrosinase co-factor MelC1.
   
 
 0.932
ung-2
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.797
SEO95502.1
BadF-type ATPase.
       0.774
SEO95449.1
2,4-dienoyl-CoA reductase.
       0.764
SEO95432.1
DNA-binding transcriptional regulator, ArsR family.
       0.718
SEO95526.1
Hypothetical protein.
       0.603
SEN06451.1
Molybdopterin synthase subunit MoaD.
 
    0.480
SEO95496.1
Protein of unknown function.
       0.474
SEN35226.1
Homocysteine S-methyltransferase.
 
     0.412
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.