STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP05618.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (279 aa)    
Predicted Functional Partners:
SEN89831.1
Glutamate mutase subunit E.
  
 0.844
SEN19979.1
Methyltransferase domain-containing protein.
  
 0.829
SEP05597.1
Galactonate dehydratase.
 
  
  0.792
SEN89888.1
Amino acid adenylation domain-containing protein.
  
 0.777
SEP05636.1
Alpha-galactosidase.
       0.773
SEN90019.1
Amino acid adenylation domain-containing protein.
  
 0.763
SEN79296.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.758
SEP05588.1
Hypothetical protein.
 
 
  0.734
SEO21049.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
  
 
0.714
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
   
  0.710
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.