STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP06014.1Transcriptional regulator, LacI family. (336 aa)    
Predicted Functional Partners:
SEN68043.1
Glutamate synthase (NADH) large subunit.
    
 
 0.801
SEP06040.1
Rhamnose transport system substrate-binding protein.
 
 
  0.786
SEP06119.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
   0.774
SEP06103.1
L-rhamnose isomerase / sugar isomerase.
 
     0.767
SEP06130.1
Rhamnulokinase.
 
 
   0.757
SEP06074.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.752
SEP06057.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.751
SEP06026.1
L-rhamnose mutarotase.
 
     0.660
SEN89888.1
Amino acid adenylation domain-containing protein.
    
   0.650
SEN61392.1
Uncharacterized protein YjbI, contains pentapeptide repeats.
       0.603
Your Current Organism:
Streptomyces rubidus
NCBI taxonomy Id: 310780
Other names: CGMCC 4.2026, JCM 13277, NBRC 102073, S. rubidus, Streptomyces rubidus Xu et al. 2006, Streptomyces sp. 13c15, strain 13c15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.