Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM68243.1 | SDN02912.1 | SAMN05216259_101166 | SAMN05216259_102373 | Protease I. | Ca2+-binding protein, EF-hand superfamily. | 0.633 |
SDM68243.1 | SDN30665.1 | SAMN05216259_101166 | SAMN05216259_103477 | Protease I. | Catalase; Belongs to the catalase family. | 0.629 |
SDM68243.1 | SDO31614.1 | SAMN05216259_101166 | SAMN05216259_1094 | Protease I. | Acetoin utilization protein AcuC. | 0.682 |
SDM68243.1 | SDO94194.1 | SAMN05216259_101166 | SAMN05216259_114127 | Protease I. | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.629 |
SDM68243.1 | SDP43080.1 | SAMN05216259_101166 | SAMN05216259_1303 | Protease I. | NADH-quinone oxidoreductase subunit F. | 0.723 |
SDM68243.1 | dnaK | SAMN05216259_101166 | SAMN05216259_101382 | Protease I. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.547 |
SDM68243.1 | rplE | SAMN05216259_101166 | SAMN05216259_109219 | Protease I. | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.550 |
SDM68243.1 | rplN | SAMN05216259_101166 | SAMN05216259_109217 | Protease I. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.687 |
SDM68243.1 | rpsJ | SAMN05216259_101166 | SAMN05216259_109206 | Protease I. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.698 |
SDM68243.1 | rpsS | SAMN05216259_101166 | SAMN05216259_109211 | Protease I. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.548 |
SDN02912.1 | SDM68243.1 | SAMN05216259_102373 | SAMN05216259_101166 | Ca2+-binding protein, EF-hand superfamily. | Protease I. | 0.633 |
SDN02912.1 | SDO31614.1 | SAMN05216259_102373 | SAMN05216259_1094 | Ca2+-binding protein, EF-hand superfamily. | Acetoin utilization protein AcuC. | 0.807 |
SDN02912.1 | dnaK | SAMN05216259_102373 | SAMN05216259_101382 | Ca2+-binding protein, EF-hand superfamily. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.751 |
SDN30665.1 | SDM68243.1 | SAMN05216259_103477 | SAMN05216259_101166 | Catalase; Belongs to the catalase family. | Protease I. | 0.629 |
SDO31614.1 | SDM68243.1 | SAMN05216259_1094 | SAMN05216259_101166 | Acetoin utilization protein AcuC. | Protease I. | 0.682 |
SDO31614.1 | SDN02912.1 | SAMN05216259_1094 | SAMN05216259_102373 | Acetoin utilization protein AcuC. | Ca2+-binding protein, EF-hand superfamily. | 0.807 |
SDO94194.1 | SDM68243.1 | SAMN05216259_114127 | SAMN05216259_101166 | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | Protease I. | 0.629 |
SDP43080.1 | SDM68243.1 | SAMN05216259_1303 | SAMN05216259_101166 | NADH-quinone oxidoreductase subunit F. | Protease I. | 0.723 |
dnaK | SDM68243.1 | SAMN05216259_101382 | SAMN05216259_101166 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Protease I. | 0.547 |
dnaK | SDN02912.1 | SAMN05216259_101382 | SAMN05216259_102373 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Ca2+-binding protein, EF-hand superfamily. | 0.751 |
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