STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO11270.1Hypothetical protein. (125 aa)    
Predicted Functional Partners:
SDM80345.1
Zinc/manganese transport system ATP-binding protein.
  
 
 0.806
SDO11895.1
Zinc transport system ATP-binding protein.
  
 
 0.806
SDO11291.1
Histidine triad (HIT) family protein.
       0.767
SDO11243.1
Tricorn protease; Degrades oligopeptides; Belongs to the peptidase S41B family.
       0.763
SDM80275.1
Zinc/manganese transport system permease protein.
  
 
 0.712
SDM80312.1
Zinc/manganese transport system permease protein.
  
 
 0.712
SDO11922.1
Zinc transport system permease protein.
  
 
 0.712
rnz
RNAse Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.699
rpsZ
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.588
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.581
Your Current Organism:
Streptomyces guanduensis
NCBI taxonomy Id: 310781
Other names: CGMCC 4.2022, JCM 13274, NBRC 102070, S. guanduensis, Streptomyces guanduensis Xu et al. 2006, Streptomyces sp. 701, strain 701
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.