Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM96235.1 | SDN63807.1 | SAMN05216259_102145 | SAMN05216259_10525 | Hypothetical protein. | PELOTA RNA binding domain-containing protein. | 0.998 |
SDM96235.1 | ndk | SAMN05216259_102145 | SAMN05216259_107238 | Hypothetical protein. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.940 |
SDM96235.1 | rplI | SAMN05216259_102145 | SAMN05216259_102195 | Hypothetical protein. | LSU ribosomal protein L9P; Binds to the 23S rRNA. | 0.988 |
SDM96235.1 | rplU | SAMN05216259_102145 | SAMN05216259_107251 | Hypothetical protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.988 |
SDM96235.1 | rplY | SAMN05216259_102145 | SAMN05216259_10698 | Hypothetical protein. | Large subunit ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.983 |
SDM96235.1 | rpmE | SAMN05216259_102145 | SAMN05216259_103143 | Hypothetical protein. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.892 |
SDM96235.1 | rpmH | SAMN05216259_102145 | SAMN05216259_102167 | Hypothetical protein. | LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. | 0.934 |
SDM96235.1 | rpsF | SAMN05216259_102145 | SAMN05216259_102192 | Hypothetical protein. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.988 |
SDM96235.1 | rpsJ | SAMN05216259_102145 | SAMN05216259_109206 | Hypothetical protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
SDM96235.1 | rpsR | SAMN05216259_102145 | SAMN05216259_102194 | Hypothetical protein. | SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.988 |
SDN63807.1 | SDM96235.1 | SAMN05216259_10525 | SAMN05216259_102145 | PELOTA RNA binding domain-containing protein. | Hypothetical protein. | 0.998 |
SDN63807.1 | rplU | SAMN05216259_10525 | SAMN05216259_107251 | PELOTA RNA binding domain-containing protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.443 |
SDN63807.1 | rpsJ | SAMN05216259_10525 | SAMN05216259_109206 | PELOTA RNA binding domain-containing protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
ndk | SDM96235.1 | SAMN05216259_107238 | SAMN05216259_102145 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | Hypothetical protein. | 0.940 |
ndk | rplI | SAMN05216259_107238 | SAMN05216259_102195 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | LSU ribosomal protein L9P; Binds to the 23S rRNA. | 0.959 |
ndk | rplU | SAMN05216259_107238 | SAMN05216259_107251 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.989 |
ndk | rpsF | SAMN05216259_107238 | SAMN05216259_102192 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
ndk | rpsJ | SAMN05216259_107238 | SAMN05216259_109206 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rplI | SDM96235.1 | SAMN05216259_102195 | SAMN05216259_102145 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | Hypothetical protein. | 0.988 |
rplI | ndk | SAMN05216259_102195 | SAMN05216259_107238 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.959 |
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