STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK61753.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (276 aa)    
Predicted Functional Partners:
tsaD
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.777
SHL57657.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
  
     0.767
SHL09551.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
  
     0.764
SHN27535.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
  
     0.764
SHK78283.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
  
     0.756
SHL57242.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
  
  
  0.756
SHK61623.1
Ribosomal-protein-alanine N-acetyltransferase.
       0.734
SHK61699.1
Hypothetical protein.
       0.733
SHK61581.1
tRNA threonylcarbamoyl adenosine modification protein YeaZ.
       0.728
SHK61794.1
RNA cap guanine-N2 methyltransferase.
       0.603
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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