Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK63589.1 | SHK63631.1 | SAMN05216499_101227 | SAMN05216499_101228 | Hypothetical protein. | SWIM zinc finger. | 0.962 |
SHK63589.1 | SHK91528.1 | SAMN05216499_101227 | SAMN05216499_10265 | Hypothetical protein. | Superfamily II DNA or RNA helicase. | 0.964 |
SHK63589.1 | SHL77976.1 | SAMN05216499_101227 | SAMN05216499_10652 | Hypothetical protein. | Hypothetical protein. | 0.939 |
SHK63589.1 | SHL79502.1 | SAMN05216499_101227 | SAMN05216499_10691 | Hypothetical protein. | Hypothetical protein. | 0.936 |
SHK63589.1 | SHM30368.1 | SAMN05216499_101227 | SAMN05216499_1102 | Hypothetical protein. | DNA excision repair protein ERCC-3. | 0.964 |
SHK63589.1 | SHM44333.1 | SAMN05216499_101227 | SAMN05216499_11137 | Hypothetical protein. | Conserved hypothetical protein. | 0.999 |
SHK63589.1 | SHN25634.1 | SAMN05216499_101227 | SAMN05216499_12943 | Hypothetical protein. | ATP-dependent DNA helicase DinG. | 0.955 |
SHK63589.1 | rpoA | SAMN05216499_101227 | SAMN05216499_101159 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.972 |
SHK63589.1 | rpoB | SAMN05216499_101227 | SAMN05216499_101101 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.975 |
SHK63589.1 | rpoZ | SAMN05216499_101227 | SAMN05216499_14031 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.976 |
SHK63631.1 | SHK63589.1 | SAMN05216499_101228 | SAMN05216499_101227 | SWIM zinc finger. | Hypothetical protein. | 0.962 |
SHK91528.1 | SHK63589.1 | SAMN05216499_10265 | SAMN05216499_101227 | Superfamily II DNA or RNA helicase. | Hypothetical protein. | 0.964 |
SHK91528.1 | SHL77976.1 | SAMN05216499_10265 | SAMN05216499_10652 | Superfamily II DNA or RNA helicase. | Hypothetical protein. | 0.616 |
SHK91528.1 | SHL79502.1 | SAMN05216499_10265 | SAMN05216499_10691 | Superfamily II DNA or RNA helicase. | Hypothetical protein. | 0.616 |
SHK91528.1 | SHN25634.1 | SAMN05216499_10265 | SAMN05216499_12943 | Superfamily II DNA or RNA helicase. | ATP-dependent DNA helicase DinG. | 0.996 |
SHK91528.1 | rpoA | SAMN05216499_10265 | SAMN05216499_101159 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
SHK91528.1 | rpoB | SAMN05216499_10265 | SAMN05216499_101101 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
SHK91528.1 | rpoZ | SAMN05216499_10265 | SAMN05216499_14031 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.995 |
SHL77976.1 | SHK63589.1 | SAMN05216499_10652 | SAMN05216499_101227 | Hypothetical protein. | Hypothetical protein. | 0.939 |
SHL77976.1 | SHK91528.1 | SAMN05216499_10652 | SAMN05216499_10265 | Hypothetical protein. | Superfamily II DNA or RNA helicase. | 0.616 |
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