STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK64838.1Hypothetical protein. (144 aa)    
Predicted Functional Partners:
SHK64774.1
Transcriptional regulator, TetR family.
 
     0.941
SHK64805.1
Protein of unknown function, DUF393.
       0.886
SHK65130.1
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
       0.603
SHK65204.1
Succinate dehydrogenase subunit D.
       0.603
SHK65242.1
Succinate dehydrogenase subunit C.
       0.603
SHL46560.1
Glycosidase.
  
     0.591
SHM34212.1
Conserved hypothetical protein.
  
     0.510
SHM34244.1
Conserved hypothetical protein.
  
     0.488
SHK64867.1
Putative drug exporter of the RND superfamily.
       0.456
SHL51140.1
AAA ATPase domain-containing protein.
  
     0.449
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.