Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK57636.1 | SHK65958.1 | SAMN05216499_10180 | SAMN05216499_101294 | Cytosine deaminase. | Thymidine phosphorylase. | 0.927 |
SHK57636.1 | SHK66539.1 | SAMN05216499_10180 | SAMN05216499_101310 | Cytosine deaminase. | Purine-nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. | 0.924 |
SHK57636.1 | pyrR | SAMN05216499_10180 | SAMN05216499_14021 | Cytosine deaminase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant. | 0.913 |
SHK57636.1 | upp | SAMN05216499_10180 | SAMN05216499_103383 | Cytosine deaminase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.933 |
SHK65914.1 | SHK65958.1 | SAMN05216499_101293 | SAMN05216499_101294 | Cytidine deaminase. | Thymidine phosphorylase. | 0.999 |
SHK65914.1 | SHK66436.1 | SAMN05216499_101293 | SAMN05216499_101307 | Cytidine deaminase. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate. | 0.830 |
SHK65914.1 | SHK66539.1 | SAMN05216499_101293 | SAMN05216499_101310 | Cytidine deaminase. | Purine-nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. | 0.971 |
SHK65914.1 | SHN11675.1 | SAMN05216499_101293 | SAMN05216499_12152 | Cytidine deaminase. | 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | 0.926 |
SHK65914.1 | psuG | SAMN05216499_101293 | SAMN05216499_11214 | Cytidine deaminase. | Pseudouridine-5'-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. | 0.519 |
SHK65914.1 | pyrR | SAMN05216499_101293 | SAMN05216499_14021 | Cytidine deaminase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant. | 0.450 |
SHK65914.1 | tdk | SAMN05216499_101293 | SAMN05216499_12532 | Cytidine deaminase. | Thymidine kinase. | 0.970 |
SHK65914.1 | upp | SAMN05216499_101293 | SAMN05216499_103383 | Cytidine deaminase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.756 |
SHK65958.1 | SHK57636.1 | SAMN05216499_101294 | SAMN05216499_10180 | Thymidine phosphorylase. | Cytosine deaminase. | 0.927 |
SHK65958.1 | SHK65914.1 | SAMN05216499_101294 | SAMN05216499_101293 | Thymidine phosphorylase. | Cytidine deaminase. | 0.999 |
SHK65958.1 | SHK66436.1 | SAMN05216499_101294 | SAMN05216499_101307 | Thymidine phosphorylase. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate. | 0.966 |
SHK65958.1 | SHK66539.1 | SAMN05216499_101294 | SAMN05216499_101310 | Thymidine phosphorylase. | Purine-nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. | 0.979 |
SHK65958.1 | SHL26044.1 | SAMN05216499_101294 | SAMN05216499_103235 | Thymidine phosphorylase. | Sulfatase. | 0.959 |
SHK65958.1 | SHN11675.1 | SAMN05216499_101294 | SAMN05216499_12152 | Thymidine phosphorylase. | 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | 0.918 |
SHK65958.1 | psuG | SAMN05216499_101294 | SAMN05216499_11214 | Thymidine phosphorylase. | Pseudouridine-5'-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. | 0.932 |
SHK65958.1 | pyrR | SAMN05216499_101294 | SAMN05216499_14021 | Thymidine phosphorylase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant. | 0.930 |
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