Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK74999.1 | SHK75077.1 | SAMN05216499_101545 | SAMN05216499_101547 | Histidinol-phosphatase. | Quaternary ammonium compound-resistance protein SugE. | 0.549 |
SHK74999.1 | SHK75315.1 | SAMN05216499_101545 | SAMN05216499_101553 | Histidinol-phosphatase. | RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. | 0.429 |
SHK74999.1 | aroA | SAMN05216499_101545 | SAMN05216499_101549 | Histidinol-phosphatase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.610 |
SHK74999.1 | rsgA | SAMN05216499_101545 | SAMN05216499_101548 | Histidinol-phosphatase. | Ribosome biogenesis GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.575 |
SHK75077.1 | SHK74999.1 | SAMN05216499_101547 | SAMN05216499_101545 | Quaternary ammonium compound-resistance protein SugE. | Histidinol-phosphatase. | 0.549 |
SHK75077.1 | SHK75196.1 | SAMN05216499_101547 | SAMN05216499_101550 | Quaternary ammonium compound-resistance protein SugE. | Peptidase M50B-like. | 0.711 |
SHK75077.1 | SHK75233.1 | SAMN05216499_101547 | SAMN05216499_101551 | Quaternary ammonium compound-resistance protein SugE. | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | 0.686 |
SHK75077.1 | SHK75276.1 | SAMN05216499_101547 | SAMN05216499_101552 | Quaternary ammonium compound-resistance protein SugE. | Hypothetical protein. | 0.686 |
SHK75077.1 | SHK75315.1 | SAMN05216499_101547 | SAMN05216499_101553 | Quaternary ammonium compound-resistance protein SugE. | RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. | 0.668 |
SHK75077.1 | SHK75358.1 | SAMN05216499_101547 | SAMN05216499_101554 | Quaternary ammonium compound-resistance protein SugE. | Mycothiol system anti-sigma-R factor. | 0.670 |
SHK75077.1 | SHK75399.1 | SAMN05216499_101547 | SAMN05216499_101555 | Quaternary ammonium compound-resistance protein SugE. | HD domain-containing protein. | 0.481 |
SHK75077.1 | SHM67024.1 | SAMN05216499_101547 | SAMN05216499_11343 | Quaternary ammonium compound-resistance protein SugE. | Streptomycin 6-kinase. | 0.509 |
SHK75077.1 | aroA | SAMN05216499_101547 | SAMN05216499_101549 | Quaternary ammonium compound-resistance protein SugE. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.774 |
SHK75077.1 | rsgA | SAMN05216499_101547 | SAMN05216499_101548 | Quaternary ammonium compound-resistance protein SugE. | Ribosome biogenesis GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.774 |
SHK75196.1 | SHK75077.1 | SAMN05216499_101550 | SAMN05216499_101547 | Peptidase M50B-like. | Quaternary ammonium compound-resistance protein SugE. | 0.711 |
SHK75196.1 | SHK75233.1 | SAMN05216499_101550 | SAMN05216499_101551 | Peptidase M50B-like. | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | 0.807 |
SHK75196.1 | SHK75276.1 | SAMN05216499_101550 | SAMN05216499_101552 | Peptidase M50B-like. | Hypothetical protein. | 0.807 |
SHK75196.1 | SHK75315.1 | SAMN05216499_101550 | SAMN05216499_101553 | Peptidase M50B-like. | RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. | 0.661 |
SHK75196.1 | SHK75358.1 | SAMN05216499_101550 | SAMN05216499_101554 | Peptidase M50B-like. | Mycothiol system anti-sigma-R factor. | 0.724 |
SHK75196.1 | SHK75399.1 | SAMN05216499_101550 | SAMN05216499_101555 | Peptidase M50B-like. | HD domain-containing protein. | 0.560 |
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