STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK76352.11-aminocyclopropane-1-carboxylate deaminase. (323 aa)    
Predicted Functional Partners:
SHK76309.1
L-amino acid N-acyltransferase YncA.
       0.831
SHK54753.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.771
SHM13096.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.771
SHK67396.1
Cystathionine gamma-lyase.
     
 0.681
SHL66292.1
Cystathionine gamma-lyase.
     
 0.681
SHK76233.1
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Belongs to the sigma-70 factor family.
       0.669
SHK94874.1
N-acetylmuramoyl-L-alanine amidase.
       0.603
SHL06890.1
Cyclic nucleotide-binding domain-containing protein.
       0.603
SHK76391.1
Transcriptional regulator, RpiR family.
       0.532
SHL30205.1
Acetyltransferase (GNAT) family protein.
       0.513
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.