STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK56815.1Transcriptional regulator, GntR family. (262 aa)    
Predicted Functional Partners:
SHK56849.1
Glycosyl transferase family 2.
 
     0.886
SHK93308.1
GntR family transcriptional regulator.
  
     0.730
SHN23942.1
Transcriptional regulator, GntR family.
  
     0.720
SHK56220.1
GntR family transcriptional regulator.
  
     0.704
SHN30675.1
Transcriptional regulator, GntR family.
  
     0.669
SHL76886.1
DNA-binding transcriptional regulator, FadR family.
  
    0.646
SHM47068.1
DNA-binding transcriptional regulator, FadR family.
  
    0.630
SHM93089.1
Transcriptional regulator, GntR family.
  
    0.528
SHN12389.1
DNA-binding transcriptional regulator, FadR family.
  
    0.488
SHK99162.1
Transcriptional regulator, AraC family.
   
    0.482
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.