Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL03117.1 | SHL03163.1 | SAMN05216499_102364 | SAMN05216499_102365 | Hypothetical protein. | Major Facilitator Superfamily protein. | 0.429 |
SHL03163.1 | SHL03117.1 | SAMN05216499_102365 | SAMN05216499_102364 | Major Facilitator Superfamily protein. | Hypothetical protein. | 0.429 |
SHL03163.1 | SHL03209.1 | SAMN05216499_102365 | SAMN05216499_102366 | Major Facilitator Superfamily protein. | Helix-turn-helix domain-containing protein. | 0.668 |
SHL03163.1 | SHL03256.1 | SAMN05216499_102365 | SAMN05216499_102367 | Major Facilitator Superfamily protein. | Transcriptional regulator, TetR family. | 0.439 |
SHL03163.1 | SHL03341.1 | SAMN05216499_102365 | SAMN05216499_102369 | Major Facilitator Superfamily protein. | Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily. | 0.410 |
SHL03163.1 | SHL03387.1 | SAMN05216499_102365 | SAMN05216499_102370 | Major Facilitator Superfamily protein. | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.599 |
SHL03209.1 | SHL03163.1 | SAMN05216499_102366 | SAMN05216499_102365 | Helix-turn-helix domain-containing protein. | Major Facilitator Superfamily protein. | 0.668 |
SHL03209.1 | SHL03256.1 | SAMN05216499_102366 | SAMN05216499_102367 | Helix-turn-helix domain-containing protein. | Transcriptional regulator, TetR family. | 0.610 |
SHL03256.1 | SHL03163.1 | SAMN05216499_102367 | SAMN05216499_102365 | Transcriptional regulator, TetR family. | Major Facilitator Superfamily protein. | 0.439 |
SHL03256.1 | SHL03209.1 | SAMN05216499_102367 | SAMN05216499_102366 | Transcriptional regulator, TetR family. | Helix-turn-helix domain-containing protein. | 0.610 |
SHL03341.1 | SHL03163.1 | SAMN05216499_102369 | SAMN05216499_102365 | Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily. | Major Facilitator Superfamily protein. | 0.410 |
SHL03341.1 | SHL03387.1 | SAMN05216499_102369 | SAMN05216499_102370 | Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily. | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.787 |
SHL03387.1 | SHL03163.1 | SAMN05216499_102370 | SAMN05216499_102365 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Major Facilitator Superfamily protein. | 0.599 |
SHL03387.1 | SHL03341.1 | SAMN05216499_102370 | SAMN05216499_102369 | Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily. | 0.787 |