STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL08979.1Beta-glucanase, GH16 family. (457 aa)    
Predicted Functional Partners:
SHM46911.1
Endoglucanase.
 
  
 0.714
SHN19548.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
     0.615
SHK68388.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
     0.607
SHK93734.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
    0.602
SHK78055.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
     0.547
SHN28494.1
Chitinase.
  
     0.535
SHM87083.1
Lysophospholipase L1.
 
     0.497
SHM34015.1
Lysophospholipase L1.
 
     0.493
SHL48264.1
Ribosomal protein S18 acetylase RimI.
  
     0.487
SHN29740.1
Lysophospholipase L1.
 
     0.484
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.