Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK72191.1 | SHL22040.1 | SAMN05216499_101468 | SAMN05216499_103131 | Hypothetical protein. | Lsr2 protein. | 0.600 |
SHL06220.1 | SHL22040.1 | SAMN05216499_102438 | SAMN05216499_103131 | Protein of unknown function. | Lsr2 protein. | 0.581 |
SHL06220.1 | rpoZ | SAMN05216499_102438 | SAMN05216499_14031 | Protein of unknown function. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.445 |
SHL06220.1 | whiA | SAMN05216499_102438 | SAMN05216499_106122 | Protein of unknown function. | Hypothetical protein; Involved in cell division and chromosome segregation. | 0.467 |
SHL21451.1 | SHL22040.1 | SAMN05216499_103113 | SAMN05216499_103131 | TIGR03083 family protein. | Lsr2 protein. | 0.686 |
SHL21451.1 | purF | SAMN05216499_103113 | SAMN05216499_103112 | TIGR03083 family protein. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. | 0.603 |
SHL21451.1 | purL | SAMN05216499_103113 | SAMN05216499_103128 | TIGR03083 family protein. | Phosphoribosylformylglycinamidine synthase; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist in [...] | 0.603 |
SHL21451.1 | purM | SAMN05216499_103113 | SAMN05216499_103111 | TIGR03083 family protein. | Phosphoribosylformylglycinamidine cyclo-ligase. | 0.603 |
SHL21451.1 | purQ | SAMN05216499_103113 | SAMN05216499_103129 | TIGR03083 family protein. | Phosphoribosylformylglycinamidine synthase; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist in [...] | 0.603 |
SHL21451.1 | purS | SAMN05216499_103113 | SAMN05216499_103130 | TIGR03083 family protein. | Phosphoribosylformylglycinamidine synthase; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist in [...] | 0.603 |
SHL21451.1 | whiA | SAMN05216499_103113 | SAMN05216499_106122 | TIGR03083 family protein. | Hypothetical protein; Involved in cell division and chromosome segregation. | 0.425 |
SHL22040.1 | SHK72191.1 | SAMN05216499_103131 | SAMN05216499_101468 | Lsr2 protein. | Hypothetical protein. | 0.600 |
SHL22040.1 | SHL06220.1 | SAMN05216499_103131 | SAMN05216499_102438 | Lsr2 protein. | Protein of unknown function. | 0.581 |
SHL22040.1 | SHL21451.1 | SAMN05216499_103131 | SAMN05216499_103113 | Lsr2 protein. | TIGR03083 family protein. | 0.686 |
SHL22040.1 | purF | SAMN05216499_103131 | SAMN05216499_103112 | Lsr2 protein. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. | 0.603 |
SHL22040.1 | purL | SAMN05216499_103131 | SAMN05216499_103128 | Lsr2 protein. | Phosphoribosylformylglycinamidine synthase; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist in [...] | 0.603 |
SHL22040.1 | purM | SAMN05216499_103131 | SAMN05216499_103111 | Lsr2 protein. | Phosphoribosylformylglycinamidine cyclo-ligase. | 0.603 |
SHL22040.1 | purQ | SAMN05216499_103131 | SAMN05216499_103129 | Lsr2 protein. | Phosphoribosylformylglycinamidine synthase; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist in [...] | 0.603 |
SHL22040.1 | purS | SAMN05216499_103131 | SAMN05216499_103130 | Lsr2 protein. | Phosphoribosylformylglycinamidine synthase; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist in [...] | 0.603 |
SHL22040.1 | rpoZ | SAMN05216499_103131 | SAMN05216499_14031 | Lsr2 protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.604 |
page 1 of 3