STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL24920.1Lipoprotein-anchoring transpeptidase ErfK/SrfK. (433 aa)    
Predicted Functional Partners:
SHM72546.1
Cobalamin-independent synthase, Catalytic domain.
  
     0.677
SHN31380.1
Colicin V production protein.
  
     0.627
SHL65535.1
Uncharacterized membrane protein.
  
     0.549
SHN13940.1
Protein of unknown function.
  
     0.544
SHN31399.1
Putative Holin-X, holin superfamily III.
  
    0.456
SHN35453.1
Protein of unknown function.
  
     0.446
SHN16648.1
Hypothetical protein.
  
     0.432
SHL06220.1
Protein of unknown function.
  
     0.410
SHN31481.1
Helicase/secretion neighborhood CpaE-like protein.
  
     0.405
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.