SHL25953.1 protein (Streptomyces paucisporeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHL25953.1

Hypothetical protein. (320 aa)

Predicted Functional Partners:

SHL26137.1

0.980

SHL26086.1

0.975

SHL25988.1

0.974

SHL26044.1

0.973

SHL10410.1

0.530

SHL25874.1

0.506

SHL25917.1

0.506

SHM56017.1

0.503

SHM47374.1

0.488

SHN30736.1

0.473

Your Current Organism:

Streptomyces paucisporeus

NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHL10410.1	SHL25953.1	SAMN05216499_102552	SAMN05216499_103233	Bifunctional DNA primase/polymerase, N-terminal.	Hypothetical protein.	0.530
SHL10410.1	SHL25988.1	SAMN05216499_102552	SAMN05216499_103234	Bifunctional DNA primase/polymerase, N-terminal.	Hypothetical protein.	0.553
SHL10410.1	SHL26044.1	SAMN05216499_102552	SAMN05216499_103235	Bifunctional DNA primase/polymerase, N-terminal.	Sulfatase.	0.514
SHL10410.1	SHL26137.1	SAMN05216499_102552	SAMN05216499_103237	Bifunctional DNA primase/polymerase, N-terminal.	Hypothetical protein.	0.549
SHL10410.1	SHM47374.1	SAMN05216499_102552	SAMN05216499_111116	Bifunctional DNA primase/polymerase, N-terminal.	Hypothetical protein.	0.436
SHL10410.1	SHN30736.1	SAMN05216499_102552	SAMN05216499_13526	Bifunctional DNA primase/polymerase, N-terminal.	Hypothetical protein.	0.416
SHL25874.1	SHL25917.1	SAMN05216499_103231	SAMN05216499_103232	Histidine kinase-like ATPase domain-containing protein.	Hypothetical protein.	0.773
SHL25874.1	SHL25953.1	SAMN05216499_103231	SAMN05216499_103233	Histidine kinase-like ATPase domain-containing protein.	Hypothetical protein.	0.506
SHL25874.1	SHL25988.1	SAMN05216499_103231	SAMN05216499_103234	Histidine kinase-like ATPase domain-containing protein.	Hypothetical protein.	0.506
SHL25874.1	SHL26044.1	SAMN05216499_103231	SAMN05216499_103235	Histidine kinase-like ATPase domain-containing protein.	Sulfatase.	0.510
SHL25874.1	SHL26086.1	SAMN05216499_103231	SAMN05216499_103236	Histidine kinase-like ATPase domain-containing protein.	Oxygen-independent coproporphyrinogen-3 oxidase.	0.506
SHL25874.1	SHL26137.1	SAMN05216499_103231	SAMN05216499_103237	Histidine kinase-like ATPase domain-containing protein.	Hypothetical protein.	0.496
SHL25917.1	SHL25874.1	SAMN05216499_103232	SAMN05216499_103231	Hypothetical protein.	Histidine kinase-like ATPase domain-containing protein.	0.773
SHL25917.1	SHL25953.1	SAMN05216499_103232	SAMN05216499_103233	Hypothetical protein.	Hypothetical protein.	0.506
SHL25917.1	SHL25988.1	SAMN05216499_103232	SAMN05216499_103234	Hypothetical protein.	Hypothetical protein.	0.506
SHL25917.1	SHL26044.1	SAMN05216499_103232	SAMN05216499_103235	Hypothetical protein.	Sulfatase.	0.506
SHL25917.1	SHL26086.1	SAMN05216499_103232	SAMN05216499_103236	Hypothetical protein.	Oxygen-independent coproporphyrinogen-3 oxidase.	0.506
SHL25917.1	SHL26137.1	SAMN05216499_103232	SAMN05216499_103237	Hypothetical protein.	Hypothetical protein.	0.496
SHL25953.1	SHL10410.1	SAMN05216499_103233	SAMN05216499_102552	Hypothetical protein.	Bifunctional DNA primase/polymerase, N-terminal.	0.530
SHL25953.1	SHL25874.1	SAMN05216499_103233	SAMN05216499_103231	Hypothetical protein.	Histidine kinase-like ATPase domain-containing protein.	0.506