SHL20881.1 protein (Streptomyces paucisporeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHL20881.1

Carbohydrate ABC transporter membrane protein 1, CUT1 family. (342 aa)

Predicted Functional Partners:

SHL20917.1

0.989

SHL20848.1

0.972

SHM34867.1

0.955

SHN13490.1

0.955

SHN13477.1

0.927

SHM34834.1

0.923

SHM10044.1

0.894

SHK94539.1

0.834

SHM77804.1

0.832

SHK97340.1

0.830

Your Current Organism:

Streptomyces paucisporeus

NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHK94539.1	SHL20848.1	SAMN05216499_102147	SAMN05216499_10393	Cellobiose transport system permease protein.	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	0.700
SHK94539.1	SHL20881.1	SAMN05216499_102147	SAMN05216499_10394	Cellobiose transport system permease protein.	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	0.834
SHK94539.1	SHM34834.1	SAMN05216499_102147	SAMN05216499_110121	Cellobiose transport system permease protein.	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	0.704
SHK94539.1	SHN13477.1	SAMN05216499_102147	SAMN05216499_1227	Cellobiose transport system permease protein.	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	0.700
SHK97340.1	SHL20848.1	SAMN05216499_102217	SAMN05216499_10393	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	0.681
SHK97340.1	SHL20881.1	SAMN05216499_102217	SAMN05216499_10394	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	0.830
SHK97340.1	SHM34834.1	SAMN05216499_102217	SAMN05216499_110121	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	0.704
SHK97340.1	SHN13477.1	SAMN05216499_102217	SAMN05216499_1227	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	0.681
SHL20848.1	SHK94539.1	SAMN05216499_10393	SAMN05216499_102147	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	Cellobiose transport system permease protein.	0.700
SHL20848.1	SHK97340.1	SAMN05216499_10393	SAMN05216499_102217	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	0.681
SHL20848.1	SHL20881.1	SAMN05216499_10393	SAMN05216499_10394	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	0.972
SHL20848.1	SHL20917.1	SAMN05216499_10393	SAMN05216499_10395	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	0.983
SHL20848.1	SHM10044.1	SAMN05216499_10393	SAMN05216499_108117	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	0.681
SHL20848.1	SHM34834.1	SAMN05216499_10393	SAMN05216499_110121	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	0.863
SHL20848.1	SHM34867.1	SAMN05216499_10393	SAMN05216499_110122	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	0.892
SHL20848.1	SHM77804.1	SAMN05216499_10393	SAMN05216499_11463	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	N-acetylglucosamine transport system permease protein.	0.681
SHL20848.1	SHN13490.1	SAMN05216499_10393	SAMN05216499_1228	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	0.925
SHL20881.1	SHK94539.1	SAMN05216499_10394	SAMN05216499_102147	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	Cellobiose transport system permease protein.	0.834
SHL20881.1	SHK97340.1	SAMN05216499_10394	SAMN05216499_102217	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	0.830
SHL20881.1	SHL20848.1	SAMN05216499_10394	SAMN05216499_10393	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	Carbohydrate ABC transporter substrate-binding protein, CUT1 family.	0.972