Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL43042.1 | SHL43083.1 | SAMN05216499_104121 | SAMN05216499_104122 | Hypothetical protein. | Two-component system, LytT family, sensor kinase. | 0.518 |
SHL43042.1 | SHL43126.1 | SAMN05216499_104121 | SAMN05216499_104123 | Hypothetical protein. | Two component transcriptional regulator, LytTR family. | 0.518 |
SHL43042.1 | SHL43164.1 | SAMN05216499_104121 | SAMN05216499_104124 | Hypothetical protein. | Hypothetical protein. | 0.518 |
SHL43042.1 | SHL43205.1 | SAMN05216499_104121 | SAMN05216499_104125 | Hypothetical protein. | Sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.518 |
SHL43083.1 | SHL43042.1 | SAMN05216499_104122 | SAMN05216499_104121 | Two-component system, LytT family, sensor kinase. | Hypothetical protein. | 0.518 |
SHL43083.1 | SHL43126.1 | SAMN05216499_104122 | SAMN05216499_104123 | Two-component system, LytT family, sensor kinase. | Two component transcriptional regulator, LytTR family. | 0.997 |
SHL43083.1 | SHL43164.1 | SAMN05216499_104122 | SAMN05216499_104124 | Two-component system, LytT family, sensor kinase. | Hypothetical protein. | 0.972 |
SHL43083.1 | SHL43205.1 | SAMN05216499_104122 | SAMN05216499_104125 | Two-component system, LytT family, sensor kinase. | Sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.966 |
SHL43083.1 | SHL43247.1 | SAMN05216499_104122 | SAMN05216499_104126 | Two-component system, LytT family, sensor kinase. | Hypothetical protein. | 0.497 |
SHL43083.1 | acsA | SAMN05216499_104122 | SAMN05216499_104127 | Two-component system, LytT family, sensor kinase. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.496 |
SHL43126.1 | SHL43042.1 | SAMN05216499_104123 | SAMN05216499_104121 | Two component transcriptional regulator, LytTR family. | Hypothetical protein. | 0.518 |
SHL43126.1 | SHL43083.1 | SAMN05216499_104123 | SAMN05216499_104122 | Two component transcriptional regulator, LytTR family. | Two-component system, LytT family, sensor kinase. | 0.997 |
SHL43126.1 | SHL43164.1 | SAMN05216499_104123 | SAMN05216499_104124 | Two component transcriptional regulator, LytTR family. | Hypothetical protein. | 0.972 |
SHL43126.1 | SHL43205.1 | SAMN05216499_104123 | SAMN05216499_104125 | Two component transcriptional regulator, LytTR family. | Sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.964 |
SHL43126.1 | SHL43247.1 | SAMN05216499_104123 | SAMN05216499_104126 | Two component transcriptional regulator, LytTR family. | Hypothetical protein. | 0.513 |
SHL43126.1 | acsA | SAMN05216499_104123 | SAMN05216499_104127 | Two component transcriptional regulator, LytTR family. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.516 |
SHL43164.1 | SHL43042.1 | SAMN05216499_104124 | SAMN05216499_104121 | Hypothetical protein. | Hypothetical protein. | 0.518 |
SHL43164.1 | SHL43083.1 | SAMN05216499_104124 | SAMN05216499_104122 | Hypothetical protein. | Two-component system, LytT family, sensor kinase. | 0.972 |
SHL43164.1 | SHL43126.1 | SAMN05216499_104124 | SAMN05216499_104123 | Hypothetical protein. | Two component transcriptional regulator, LytTR family. | 0.972 |
SHL43164.1 | SHL43205.1 | SAMN05216499_104124 | SAMN05216499_104125 | Hypothetical protein. | Sodium:solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.970 |
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