Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL47962.1 | SHL48006.1 | SAMN05216499_104232 | SAMN05216499_104233 | Hypothetical protein. | BadF-type ATPase. | 0.773 |
SHL47962.1 | SHL48045.1 | SAMN05216499_104232 | SAMN05216499_104234 | Hypothetical protein. | Protein of unknown function. | 0.773 |
SHL47962.1 | ung | SAMN05216499_104232 | SAMN05216499_104235 | Hypothetical protein. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.724 |
SHL48006.1 | SHL47962.1 | SAMN05216499_104233 | SAMN05216499_104232 | BadF-type ATPase. | Hypothetical protein. | 0.773 |
SHL48006.1 | SHL48045.1 | SAMN05216499_104233 | SAMN05216499_104234 | BadF-type ATPase. | Protein of unknown function. | 0.886 |
SHL48006.1 | ung | SAMN05216499_104233 | SAMN05216499_104235 | BadF-type ATPase. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.806 |
SHL48045.1 | SHL47962.1 | SAMN05216499_104234 | SAMN05216499_104232 | Protein of unknown function. | Hypothetical protein. | 0.773 |
SHL48045.1 | SHL48006.1 | SAMN05216499_104234 | SAMN05216499_104233 | Protein of unknown function. | BadF-type ATPase. | 0.886 |
SHL48045.1 | ung | SAMN05216499_104234 | SAMN05216499_104235 | Protein of unknown function. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.805 |
SHL64433.1 | SHM56965.1 | SAMN05216499_105191 | SAMN05216499_11258 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease-3. | 0.970 |
SHL64433.1 | SHM59186.1 | SAMN05216499_105191 | SAMN05216499_112117 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease III. | 0.970 |
SHL64433.1 | ung | SAMN05216499_105191 | SAMN05216499_104235 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.867 |
SHL64433.1 | ung-2 | SAMN05216499_105191 | SAMN05216499_10928 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.867 |
SHL85398.1 | SHM96292.1 | SAMN05216499_106251 | SAMN05216499_11751 | Phenazine biosynthesis protein phzE. | Phenazine biosynthesis protein phzE. | 0.999 |
SHL85398.1 | SHN26401.1 | SAMN05216499_106251 | SAMN05216499_13012 | Phenazine biosynthesis protein phzE. | Phenazine biosynthesis protein phzE. | 0.999 |
SHL85398.1 | ung | SAMN05216499_106251 | SAMN05216499_104235 | Phenazine biosynthesis protein phzE. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.574 |
SHL85398.1 | ung-2 | SAMN05216499_106251 | SAMN05216499_10928 | Phenazine biosynthesis protein phzE. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.574 |
SHM56965.1 | SHL64433.1 | SAMN05216499_11258 | SAMN05216499_105191 | Exodeoxyribonuclease-3. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.970 |
SHM56965.1 | SHM59186.1 | SAMN05216499_11258 | SAMN05216499_112117 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease III. | 0.935 |
SHM56965.1 | ung | SAMN05216499_11258 | SAMN05216499_104235 | Exodeoxyribonuclease-3. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.882 |
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