Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK67554.1 | SHL48430.1 | SAMN05216499_101339 | SAMN05216499_104244 | L-threonine ammonia-lyase. | L-threonine aldolase. | 0.929 |
SHK67554.1 | SHM31219.1 | SAMN05216499_101339 | SAMN05216499_11023 | L-threonine ammonia-lyase. | Threonine synthase. | 0.981 |
SHK67554.1 | SHN35313.1 | SAMN05216499_101339 | SAMN05216499_14314 | L-threonine ammonia-lyase. | L-threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.985 |
SHK67554.1 | gcvP | SAMN05216499_101339 | SAMN05216499_1093 | L-threonine ammonia-lyase. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.578 |
SHK67554.1 | gcvT | SAMN05216499_101339 | SAMN05216499_113196 | L-threonine ammonia-lyase. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.595 |
SHK67554.1 | glyA | SAMN05216499_101339 | SAMN05216499_104161 | L-threonine ammonia-lyase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.881 |
SHK67554.1 | glyA-2 | SAMN05216499_101339 | SAMN05216499_113198 | L-threonine ammonia-lyase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.881 |
SHL48349.1 | SHL48387.1 | SAMN05216499_104242 | SAMN05216499_104243 | Hypothetical protein. | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | 0.979 |
SHL48349.1 | SHL48430.1 | SAMN05216499_104242 | SAMN05216499_104244 | Hypothetical protein. | L-threonine aldolase. | 0.965 |
SHL48349.1 | SHL48472.1 | SAMN05216499_104242 | SAMN05216499_104245 | Hypothetical protein. | Transglutaminase-like superfamily protein. | 0.810 |
SHL48387.1 | SHL48349.1 | SAMN05216499_104243 | SAMN05216499_104242 | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | Hypothetical protein. | 0.979 |
SHL48387.1 | SHL48430.1 | SAMN05216499_104243 | SAMN05216499_104244 | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | L-threonine aldolase. | 0.954 |
SHL48387.1 | SHL48472.1 | SAMN05216499_104243 | SAMN05216499_104245 | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | Transglutaminase-like superfamily protein. | 0.826 |
SHL48430.1 | SHK67554.1 | SAMN05216499_104244 | SAMN05216499_101339 | L-threonine aldolase. | L-threonine ammonia-lyase. | 0.929 |
SHL48430.1 | SHL48349.1 | SAMN05216499_104244 | SAMN05216499_104242 | L-threonine aldolase. | Hypothetical protein. | 0.965 |
SHL48430.1 | SHL48387.1 | SAMN05216499_104244 | SAMN05216499_104243 | L-threonine aldolase. | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | 0.954 |
SHL48430.1 | SHL48472.1 | SAMN05216499_104244 | SAMN05216499_104245 | L-threonine aldolase. | Transglutaminase-like superfamily protein. | 0.826 |
SHL48430.1 | SHM31219.1 | SAMN05216499_104244 | SAMN05216499_11023 | L-threonine aldolase. | Threonine synthase. | 0.931 |
SHL48430.1 | SHN35313.1 | SAMN05216499_104244 | SAMN05216499_14314 | L-threonine aldolase. | L-threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.949 |
SHL48430.1 | gcvP | SAMN05216499_104244 | SAMN05216499_1093 | L-threonine aldolase. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.964 |
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