Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK74701.1 | SHK76876.1 | SAMN05216499_101537 | SAMN05216499_101590 | TPR repeat. | Molecular chaperone DnaK. | 0.711 |
SHK74701.1 | SHL49718.1 | SAMN05216499_101537 | SAMN05216499_104275 | TPR repeat. | Right handed beta helix region. | 0.918 |
SHK76876.1 | SHK74701.1 | SAMN05216499_101590 | SAMN05216499_101537 | Molecular chaperone DnaK. | TPR repeat. | 0.711 |
SHK76876.1 | SHL49718.1 | SAMN05216499_101590 | SAMN05216499_104275 | Molecular chaperone DnaK. | Right handed beta helix region. | 0.955 |
SHK76876.1 | SHL63557.1 | SAMN05216499_101590 | SAMN05216499_105170 | Molecular chaperone DnaK. | Z1 domain-containing protein. | 0.649 |
SHK76876.1 | SHL64433.1 | SAMN05216499_101590 | SAMN05216499_105191 | Molecular chaperone DnaK. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.425 |
SHK76876.1 | SHM89323.1 | SAMN05216499_101590 | SAMN05216499_11612 | Molecular chaperone DnaK. | Hypothetical protein. | 0.711 |
SHK76876.1 | glpK | SAMN05216499_101590 | SAMN05216499_104322 | Molecular chaperone DnaK. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.953 |
SHK76876.1 | glpK-2 | SAMN05216499_101590 | SAMN05216499_11153 | Molecular chaperone DnaK. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.953 |
SHL46515.1 | SHL49718.1 | SAMN05216499_104200 | SAMN05216499_104275 | Hypothetical protein. | Right handed beta helix region. | 0.934 |
SHL49718.1 | SHK74701.1 | SAMN05216499_104275 | SAMN05216499_101537 | Right handed beta helix region. | TPR repeat. | 0.918 |
SHL49718.1 | SHK76876.1 | SAMN05216499_104275 | SAMN05216499_101590 | Right handed beta helix region. | Molecular chaperone DnaK. | 0.955 |
SHL49718.1 | SHL46515.1 | SAMN05216499_104275 | SAMN05216499_104200 | Right handed beta helix region. | Hypothetical protein. | 0.934 |
SHL49718.1 | SHL63557.1 | SAMN05216499_104275 | SAMN05216499_105170 | Right handed beta helix region. | Z1 domain-containing protein. | 0.914 |
SHL49718.1 | SHL64433.1 | SAMN05216499_104275 | SAMN05216499_105191 | Right handed beta helix region. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.907 |
SHL49718.1 | SHM89323.1 | SAMN05216499_104275 | SAMN05216499_11612 | Right handed beta helix region. | Hypothetical protein. | 0.906 |
SHL49718.1 | SHN22114.1 | SAMN05216499_104275 | SAMN05216499_126103 | Right handed beta helix region. | Acetoin utilization protein AcuC. | 0.943 |
SHL49718.1 | alc | SAMN05216499_104275 | SAMN05216499_11239 | Right handed beta helix region. | Allantoicase; Belongs to the allantoicase family. | 0.845 |
SHL49718.1 | glpK | SAMN05216499_104275 | SAMN05216499_104322 | Right handed beta helix region. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.858 |
SHL49718.1 | glpK-2 | SAMN05216499_104275 | SAMN05216499_11153 | Right handed beta helix region. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.858 |
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