STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL40030.1Predicted arabinose efflux permease, MFS family. (570 aa)    
Predicted Functional Partners:
SHL40062.1
DNA-binding transcriptional regulator, MarR family.
 
     0.751
SHL39992.1
Protein of unknown function.
       0.535
SHM33579.1
Carboxymethylenebutenolidase.
 
     0.478
SHN37710.1
Physarolisin II. Serine peptidase. MEROPS family S53.
  
     0.467
SHM33619.1
Hypothetical protein.
 
     0.462
SHN38195.1
Major Facilitator Superfamily protein.
  
     0.448
SHL20719.1
Uncharacterized membrane protein.
  
     0.419
SHM06127.1
Physarolisin II. Serine peptidase. MEROPS family S53.
  
     0.416
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.