Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL57242.1 | SHL70377.1 | SAMN05216499_1052 | SAMN05216499_105341 | Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. | GtrA-like protein. | 0.587 |
SHL57242.1 | SHM46911.1 | SAMN05216499_1052 | SAMN05216499_111104 | Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. | Endoglucanase. | 0.759 |
SHL70293.1 | SHL70332.1 | SAMN05216499_105339 | SAMN05216499_105340 | Two-component system, OmpR family, response regulator. | Two-component system, OmpR family, sensor kinase. | 0.980 |
SHL70293.1 | SHL70377.1 | SAMN05216499_105339 | SAMN05216499_105341 | Two-component system, OmpR family, response regulator. | GtrA-like protein. | 0.774 |
SHL70293.1 | SHL70414.1 | SAMN05216499_105339 | SAMN05216499_105342 | Two-component system, OmpR family, response regulator. | 4-amino-4-deoxy-L-arabinose transferase. | 0.767 |
SHL70293.1 | SHM72040.1 | SAMN05216499_105339 | SAMN05216499_113170 | Two-component system, OmpR family, response regulator. | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. | 0.754 |
SHL70293.1 | SHN25216.1 | SAMN05216499_105339 | SAMN05216499_1296 | Two-component system, OmpR family, response regulator. | Signal transduction histidine kinase. | 0.994 |
SHL70332.1 | SHL70293.1 | SAMN05216499_105340 | SAMN05216499_105339 | Two-component system, OmpR family, sensor kinase. | Two-component system, OmpR family, response regulator. | 0.980 |
SHL70332.1 | SHL70377.1 | SAMN05216499_105340 | SAMN05216499_105341 | Two-component system, OmpR family, sensor kinase. | GtrA-like protein. | 0.819 |
SHL70332.1 | SHL70414.1 | SAMN05216499_105340 | SAMN05216499_105342 | Two-component system, OmpR family, sensor kinase. | 4-amino-4-deoxy-L-arabinose transferase. | 0.789 |
SHL70332.1 | SHM72040.1 | SAMN05216499_105340 | SAMN05216499_113170 | Two-component system, OmpR family, sensor kinase. | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. | 0.761 |
SHL70332.1 | SHN25216.1 | SAMN05216499_105340 | SAMN05216499_1296 | Two-component system, OmpR family, sensor kinase. | Signal transduction histidine kinase. | 0.999 |
SHL70377.1 | SHL57242.1 | SAMN05216499_105341 | SAMN05216499_1052 | GtrA-like protein. | Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. | 0.587 |
SHL70377.1 | SHL70293.1 | SAMN05216499_105341 | SAMN05216499_105339 | GtrA-like protein. | Two-component system, OmpR family, response regulator. | 0.774 |
SHL70377.1 | SHL70332.1 | SAMN05216499_105341 | SAMN05216499_105340 | GtrA-like protein. | Two-component system, OmpR family, sensor kinase. | 0.819 |
SHL70377.1 | SHL70414.1 | SAMN05216499_105341 | SAMN05216499_105342 | GtrA-like protein. | 4-amino-4-deoxy-L-arabinose transferase. | 0.972 |
SHL70377.1 | SHM46911.1 | SAMN05216499_105341 | SAMN05216499_111104 | GtrA-like protein. | Endoglucanase. | 0.551 |
SHL70377.1 | SHM72040.1 | SAMN05216499_105341 | SAMN05216499_113170 | GtrA-like protein. | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. | 0.855 |
SHL70377.1 | SHN00453.1 | SAMN05216499_105341 | SAMN05216499_11818 | GtrA-like protein. | Glucose/arabinose dehydrogenase, beta-propeller fold. | 0.589 |
SHL70377.1 | SHN10987.1 | SAMN05216499_105341 | SAMN05216499_1215 | GtrA-like protein. | Hypothetical protein. | 0.565 |
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